J3_6M62_012
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUUUCUGCUGGAUUAAC
- Length
- 29 nucleotides
- Bulged bases
- 6M62|1|1|U|2314, 6M62|1|1|U|2318
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6M62|1|1|G|2130
6M62|1|1|A|2131
6M62|1|1|C|2132
6M62|1|1|U|2133
6M62|1|1|G|2134
*
6M62|1|1|C|2146
6M62|1|1|A|2147
6M62|1|1|U|2148
6M62|1|1|A|2149
6M62|1|1|G|2150
*
6M62|1|1|U|2186
6M62|1|1|G|2187
6M62|1|1|A|2188
6M62|1|1|U|2189
6M62|1|1|U|2190
6M62|1|1|U|2191
6M62|1|1|C|2192
6M62|1|1|U|2193
6M62|1|1|G|2194
6M62|1|1|C|2195
6M62|1|1|U|2314
6M62|1|1|G|2315
6M62|1|1|G|2316
6M62|1|1|A|2317
6M62|1|1|U|2318
6M62|1|1|U|2319
6M62|1|1|A|2320
6M62|1|1|A|2321
6M62|1|1|C|2322
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
Coloring options: