3D structure

PDB id
6M62 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUCAU*AGUAGAAC*GUAAAAG
Length
20 nucleotides
Bulged bases
6M62|1|1|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6M62|1|1|C|2664
6M62|1|1|U|2665
6M62|1|1|C|2666
6M62|1|1|A|2667
6M62|1|1|U|2668
*
6M62|1|1|A|2686
6M62|1|1|G|2687
6M62|1|1|U|2688
6M62|1|1|A|2689
6M62|1|1|G|2690
6M62|1|1|A|2691
6M62|1|1|A|2692
6M62|1|1|C|2693
*
6M62|1|1|G|2700
6M62|1|1|U|2701
6M62|1|1|A|2702
6M62|1|1|A|2703
6M62|1|1|A|2704
6M62|1|1|A|2705
6M62|1|1|G|2706

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain D
60S ribosomal protein L5
Chain J
60S ribosomal protein L11-A
Chain v
Ribosome biogenesis protein RPF2

Coloring options:

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