J3_6M62_018
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 6M62|1|1|U|117, 6M62|1|1|G|120, 6M62|1|1|A|121, 6M62|1|1|U|147, 6M62|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6M62|1|1|C|113
6M62|1|1|A|114
6M62|1|1|A|115
6M62|1|1|A|116
6M62|1|1|U|117
6M62|1|1|U|118
6M62|1|1|U|119
6M62|1|1|G|120
6M62|1|1|A|121
6M62|1|1|A|122
6M62|1|1|A|123
6M62|1|1|U|124
*
6M62|1|1|A|144
6M62|1|1|G|145
6M62|1|1|U|146
6M62|1|1|U|147
6M62|1|1|G|148
6M62|1|1|U|149
6M62|1|1|A|150
6M62|1|1|A|151
6M62|1|1|U|152
6M62|1|1|U|153
6M62|1|1|U|154
6M62|1|1|G|155
6M62|1|1|G|156
6M62|1|1|A|157
6M62|1|1|G|158
*
6M62|1|1|C|263
6M62|1|1|G|264
6M62|1|1|A|265
6M62|1|1|A|266
6M62|1|1|G|267
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain n
- Pescadillo homolog
Coloring options: