J3_6M62_020
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6M62|1|1|A|398, 6M62|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6M62_020 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0785
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6M62|1|1|A|369
6M62|1|1|U|370
6M62|1|1|G|371
6M62|1|1|A|372
6M62|1|1|A|373
6M62|1|1|A|374
6M62|1|1|A|375
6M62|1|1|G|376
6M62|1|1|A|377
6M62|1|1|A|378
6M62|1|1|C|379
*
6M62|1|1|G|390
6M62|1|1|A|391
6M62|1|1|G|392
6M62|1|1|U|393
6M62|1|1|G|394
6M62|1|1|A|395
6M62|1|1|A|396
6M62|1|1|A|397
6M62|1|1|A|398
6M62|1|1|A|399
6M62|1|1|G|400
6M62|1|1|U|401
6M62|1|1|A|402
6M62|1|1|C|403
6M62|1|1|G|404
*
6M62|1|2|C|19
6M62|1|2|U|20
Current chains
- Chain 1
- RDN25-1 rRNA
- Chain 2
- RDN58-1 rRNA
Nearby chains
- Chain 4
- Probable metalloprotease ARX1
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain l
- 60S ribosomal protein L39
Coloring options: