J3_6M62_024
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGCUGG*CACGUUCUAGCAUUCAAG*UGAUC
- Length
- 30 nucleotides
- Bulged bases
- 6M62|1|1|A|2529, 6M62|1|1|C|2548, 6M62|1|1|G|2549, 6M62|1|1|U|2550, 6M62|1|1|U|2551, 6M62|1|1|A|2554, 6M62|1|1|U|2558, 6M62|1|1|U|2559, 6M62|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6M62|1|1|G|2528
6M62|1|1|A|2529
6M62|1|1|G|2530
6M62|1|1|C|2531
6M62|1|1|U|2532
6M62|1|1|G|2533
6M62|1|1|G|2534
*
6M62|1|1|C|2546
6M62|1|1|A|2547
6M62|1|1|C|2548
6M62|1|1|G|2549
6M62|1|1|U|2550
6M62|1|1|U|2551
6M62|1|1|C|2552
6M62|1|1|U|2553
6M62|1|1|A|2554
6M62|1|1|G|2555
6M62|1|1|C|2556
6M62|1|1|A|2557
6M62|1|1|U|2558
6M62|1|1|U|2559
6M62|1|1|C|2560
6M62|1|1|A|2561
6M62|1|1|A|2562
6M62|1|1|G|2563
*
6M62|1|1|U|2578
6M62|1|1|G|2579
6M62|1|1|A|2580
6M62|1|1|U|2581
6M62|1|1|C|2582
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
- Chain q
- Ribosome biogenesis protein NOP53
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