J3_6M62_027
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUUGUGAA*UUUACUUAUU*AAGACAUUG
- Length
- 28 nucleotides
- Bulged bases
- 6M62|1|1|U|2433, 6M62|1|1|A|2438, 6M62|1|1|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6M62|1|1|C|2431
6M62|1|1|A|2432
6M62|1|1|U|2433
6M62|1|1|U|2434
6M62|1|1|G|2435
6M62|1|1|U|2436
6M62|1|1|G|2437
6M62|1|1|A|2438
6M62|1|1|A|2439
*
6M62|1|1|U|2508
6M62|1|1|U|2509
6M62|1|1|U|2510
6M62|1|1|A|2511
6M62|1|1|C|2512
6M62|1|1|U|2513
6M62|1|1|U|2514
6M62|1|1|A|2515
6M62|1|1|U|2516
6M62|1|1|U|2517
*
6M62|1|1|A|2590
6M62|1|1|A|2591
6M62|1|1|G|2592
6M62|1|1|A|2593
6M62|1|1|C|2594
6M62|1|1|A|2595
6M62|1|1|U|2596
6M62|1|1|U|2597
6M62|1|1|G|2598
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: