J3_6MKN_009

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MKN_009 not in the Motif Atlas

Homologous match to J3_4LFB_007

Geometric discrepancy: 0.0462

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6MKN|1|A|C|1063
6MKN|1|A|G|1064
6MKN|1|A|U|1065
6MKN|1|A|C|1066
6MKN|1|A|A|1067
6MKN|1|A|G|1068
*
6MKN|1|A|C|1107
6MKN|1|A|G|1108
6MKN|1|A|C|1109
6MKN|1|A|A|1110
6MKN|1|A|A|1111
6MKN|1|A|C|1112
6MKN|1|A|C|1113
*
6MKN|1|A|G|1187
6MKN|1|A|A|1188
6MKN|1|A|C|1189
6MKN|1|A|G|1190
6MKN|1|A|A|1191
6MKN|1|A|C|1192
6MKN|1|A|G|1193

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain C

30S ribosomal protein S3

Chain E

30S ribosomal protein S5

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z