J3_6MPF_009

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MPF_009 not in the Motif Atlas

Homologous match to J3_4LFB_007

Geometric discrepancy: 0.076

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01343.1

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6MPF|1|A|C|1045
6MPF|1|A|G|1046
6MPF|1|A|U|1047
6MPF|1|A|C|1048
6MPF|1|A|A|1049
6MPF|1|A|G|1050
*
6MPF|1|A|C|1089
6MPF|1|A|G|1090
6MPF|1|A|C|1091
6MPF|1|A|A|1092
6MPF|1|A|A|1093
6MPF|1|A|C|1094
6MPF|1|A|C|1095
*
6MPF|1|A|G|1168
6MPF|1|A|A|1169
6MPF|1|A|C|1170
6MPF|1|A|G|1171
6MPF|1|A|A|1172
6MPF|1|A|C|1173
6MPF|1|A|G|1174

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain C

30S ribosomal protein S3

Chain E

30S ribosomal protein S5

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z