3D structure

PDB id
6MPF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.33 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
6MPF|1|A|A|1164
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6MPF_018 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.103
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_40706.1
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6MPF|1|A|C|1098
6MPF|1|A|G|1099
6MPF|1|A|C|1100
*
6MPF|1|A|G|1137
6MPF|1|A|G|1138
6MPF|1|A|A|1139
6MPF|1|A|C|1140
6MPF|1|A|U|1141
6MPF|1|A|G|1142
6MPF|1|A|C|1143
*
6MPF|1|A|G|1156
6MPF|1|A|A|1157
6MPF|1|A|G|1158
6MPF|1|A|G|1159
6MPF|1|A|A|1160
6MPF|1|A|A|1161
6MPF|1|A|G|1162
6MPF|1|A|G|1163
6MPF|1|A|A|1164
6MPF|1|A|G|1165

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z

Coloring options:


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