J3_6MPI_019
3D structure
- PDB id
- 6MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 6MPI|1|A|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MPI_019 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.0963
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6MPI|1|A|C|1116
6MPI|1|A|G|1117
6MPI|1|A|C|1118
*
6MPI|1|A|G|1155
6MPI|1|A|G|1156
6MPI|1|A|A|1157
6MPI|1|A|C|1158
6MPI|1|A|U|1159
6MPI|1|A|G|1160
6MPI|1|A|C|1161
*
6MPI|1|A|G|1175
6MPI|1|A|A|1176
6MPI|1|A|G|1177
6MPI|1|A|G|1178
6MPI|1|A|A|1179
6MPI|1|A|A|1180
6MPI|1|A|G|1181
6MPI|1|A|G|1182
6MPI|1|A|A|1183
6MPI|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain N
- 30S ribosomal protein S14 type Z
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