J3_6MTB_042
3D structure
- PDB id
- 6MTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUC
- Length
- 21 nucleotides
- Bulged bases
- 6MTB|1|5|C|4337, 6MTB|1|5|U|4374
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MTB_042 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0888
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6MTB|1|5|G|4228
6MTB|1|5|U|4229
6MTB|1|5|C|4230
*
6MTB|1|5|G|4331
6MTB|1|5|C|4332
6MTB|1|5|C|4333
6MTB|1|5|U|4334
6MTB|1|5|5MC|4335
6MTB|1|5|A|4336
6MTB|1|5|C|4337
6MTB|1|5|G|4338
6MTB|1|5|A|4339
6MTB|1|5|U|4340
6MTB|1|5|C|4341
6MTB|1|5|C|4342
*
6MTB|1|5|OMG|4370
6MTB|1|5|MHG|4371
6MTB|1|5|U|4372
6MTB|1|5|G|4373
6MTB|1|5|U|4374
6MTB|1|5|C|4375
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain Q
- 60S ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L36a
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