3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GCAG*CG(PSU)AG*UCCGAC
Length
15 nucleotides
Bulged bases
6MTC|1|5|A|1613
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6MTC_005 not in the Motif Atlas
Homologous match to J3_5TBW_005
Geometric discrepancy: 0.2228
The information below is about J3_5TBW_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_33851.1
Basepair signature
cWW-tSH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6MTC|1|5|G|1545
6MTC|1|5|C|1546
6MTC|1|5|A|1547
6MTC|1|5|G|1548
*
6MTC|1|5|C|1580
6MTC|1|5|G|1581
6MTC|1|5|PSU|1582
6MTC|1|5|A|1583
6MTC|1|5|G|1584
*
6MTC|1|5|U|1609
6MTC|1|5|C|1610
6MTC|1|5|C|1611
6MTC|1|5|G|1612
6MTC|1|5|A|1613
6MTC|1|5|C|1614

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain R
60S ribosomal protein L19
Chain g
60S ribosomal protein L34
Chain p
60S ribosomal protein L37a

Coloring options:


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