J3_6MTC_006

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTC_006 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2645

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6MTC|1|5|G|1969
6MTC|1|5|A|1970
6MTC|1|5|U|1971
*
6MTC|1|5|G|1995
6MTC|1|5|C|1996
6MTC|1|5|U|1997
6MTC|1|5|A|1998
6MTC|1|5|A|1999
6MTC|1|5|G|2000
6MTC|1|5|G|2001
*
6MTC|1|5|C|2016
6MTC|1|5|A|2017
6MTC|1|5|C|2018

Current chains

Chain 5

28S rRNA

Nearby chains