J3_6MTC_024

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6MTC|1|9|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTC|1|9|C|1094
6MTC|1|9|U|1095
6MTC|1|9|G|1096
*
6MTC|1|9|U|1136
6MTC|1|9|U|1137
6MTC|1|9|C|1138
6MTC|1|9|C|1139
6MTC|1|9|G|1140
*
6MTC|1|9|C|1147
6MTC|1|9|A|1148
6MTC|1|9|A|1149
6MTC|1|9|A|1150
6MTC|1|9|G|1151

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain VV

40S ribosomal protein S21

Chain WW

40S ribosomal protein S15a

Chain aa

40S ribosomal protein S26

Chain bb

40S ribosomal protein S27