J3_6MTC_025

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

6MTC|1|9|C|1646, 6MTC|1|9|A|1679

QA status

Modified nucleotides: B8Q, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTC_025 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.1389

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6MTC|1|9|C|1218
6MTC|1|9|B8Q|1219
6MTC|1|9|A|1220
6MTC|1|9|G|1221
*
6MTC|1|9|C|1645
6MTC|1|9|C|1646
6MTC|1|9|A|1647
6MTC|1|9|G|1648
6MTC|1|9|U|1649
6MTC|1|9|A|1650
6MTC|1|9|A|1651
*
6MTC|1|9|U|1673
6MTC|1|9|G|1674
6MTC|1|9|A|1675
6MTC|1|9|U|1676
6MTC|1|9|U|1677
6MTC|1|9|A2M|1678
6MTC|1|9|A|1679
6MTC|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S5

Chain QQ

40S ribosomal protein S16

Chain cc

40S ribosomal protein S28