3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CACUG*CGUGAUGG*CGAG
Length
17 nucleotides
Bulged bases
6MTC|1|9|U|1535, 6MTC|1|9|G|1603
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6MTC_032 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.1676
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

6MTC|1|9|C|1532
6MTC|1|9|A|1533
6MTC|1|9|C|1534
6MTC|1|9|U|1535
6MTC|1|9|G|1536
*
6MTC|1|9|C|1597
6MTC|1|9|G|1598
6MTC|1|9|U|1599
6MTC|1|9|G|1600
6MTC|1|9|A|1601
6MTC|1|9|U|1602
6MTC|1|9|G|1603
6MTC|1|9|G|1604
*
6MTC|1|9|C|1635
6MTC|1|9|G|1636
6MTC|1|9|A|1637
6MTC|1|9|G|1638

Current chains

Chain 9
18S rRNA

Nearby chains

Chain FF
40S ribosomal protein S5
Chain SS
40S ribosomal protein S18
Chain TT
40S ribosomal protein S19
Chain ZZ
40S ribosomal protein S25

Coloring options:


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