J3_6MTC_046

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

6MTC|1|9|A|45, 6MTC|1|9|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTC_046 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0894

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6MTC|1|9|A|40
6MTC|1|9|G|41
6MTC|1|9|A|42
6MTC|1|9|U|43
6MTC|1|9|U|44
6MTC|1|9|A|45
6MTC|1|9|A|46
6MTC|1|9|G|47
*
6MTC|1|9|C|479
6MTC|1|9|G|480
6MTC|1|9|C|481
6MTC|1|9|G|482
6MTC|1|9|C|483
6MTC|1|9|A2M|484
6MTC|1|9|A|485
6MTC|1|9|A|486
6MTC|1|9|U|487
*
6MTC|1|9|A|512
6MTC|1|9|G|513
6MTC|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain XX

40S ribosomal protein S23