3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAU*GCUAAGG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6MTD_006 not in the Motif Atlas
Homologous match to J3_5TBW_007
Geometric discrepancy: 0.1984
The information below is about J3_5TBW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.3
Basepair signature
cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
7

Unit IDs

6MTD|1|5|G|1969
6MTD|1|5|A|1970
6MTD|1|5|U|1971
*
6MTD|1|5|G|1995
6MTD|1|5|C|1996
6MTD|1|5|U|1997
6MTD|1|5|A|1998
6MTD|1|5|A|1999
6MTD|1|5|G|2000
6MTD|1|5|G|2001
*
6MTD|1|5|C|2016
6MTD|1|5|A|2017
6MTD|1|5|C|2018

Current chains

Chain 5
28S rRNA

Nearby chains

Chain s
uL10
Chain t
eL11

Coloring options:


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