J3_6MTD_006
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAU*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MTD_006 not in the Motif Atlas
- Homologous match to J3_5TBW_007
- Geometric discrepancy: 0.1984
- The information below is about J3_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.3
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6MTD|1|5|G|1969
6MTD|1|5|A|1970
6MTD|1|5|U|1971
*
6MTD|1|5|G|1995
6MTD|1|5|C|1996
6MTD|1|5|U|1997
6MTD|1|5|A|1998
6MTD|1|5|A|1999
6MTD|1|5|G|2000
6MTD|1|5|G|2001
*
6MTD|1|5|C|2016
6MTD|1|5|A|2017
6MTD|1|5|C|2018
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain s
- uL10
- Chain t
- eL11
Coloring options: