J3_6MTD_007

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6MTD|1|5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_007 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1051

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6MTD|1|5|C|2393
6MTD|1|5|G|2394
6MTD|1|5|A|2395
6MTD|1|5|A|2396
6MTD|1|5|G|2397
6MTD|1|5|U|2398
6MTD|1|5|G|2399
*
6MTD|1|5|C|2805
6MTD|1|5|A|2806
6MTD|1|5|A|2807
*
6MTD|1|5|U|2819
6MTD|1|5|C|2820
6MTD|1|5|U|2821
6MTD|1|5|G|2822

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain g

eL34