J3_6MTD_008

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*C(B9H)AUAUC*GUC

Length

14 nucleotides

Bulged bases

6MTD|1|5|U|2788, 6MTD|1|5|A|2789

QA status

Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_008 not in the Motif Atlas

Homologous match to J3_8P9A_054

Geometric discrepancy: 0.1458

The information below is about J3_8P9A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6MTD|1|5|G|2402
6MTD|1|5|A|2403
6MTD|1|5|A|2404
6MTD|1|5|G|2405
*
6MTD|1|5|C|2785
6MTD|1|5|B9H|2786
6MTD|1|5|A|2787
6MTD|1|5|U|2788
6MTD|1|5|A|2789
6MTD|1|5|U|2790
6MTD|1|5|C|2791
*
6MTD|1|5|G|2800
6MTD|1|5|U|2801
6MTD|1|5|C|2802

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34

Chain j

eL37

Chain l

eL39