J3_8P9A_054
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8P9A|1|AR|U|1840, 8P9A|1|AR|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
8P9A|1|AR|G|1488
8P9A|1|AR|A|1489
8P9A|1|AR|A|1490
8P9A|1|AR|A|1491
*
8P9A|1|AR|U|1837
8P9A|1|AR|G|1838
8P9A|1|AR|A|1839
8P9A|1|AR|U|1840
8P9A|1|AR|A|1841
8P9A|1|AR|A|1842
8P9A|1|AR|C|1843
*
8P9A|1|AR|G|1852
8P9A|1|AR|U|1853
8P9A|1|AR|C|1854
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DI
- 60S ribosomal protein L34-A
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
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