J3_6MTD_009
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MTD_009 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1366
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6MTD|1|5|U|2440
6MTD|1|5|C|2441
6MTD|1|5|G|2442
6MTD|1|5|G|2443
6MTD|1|5|U|2444
6MTD|1|5|C|2445
*
6MTD|1|5|G|2515
6MTD|1|5|G|2516
6MTD|1|5|A|2517
6MTD|1|5|G|2518
6MTD|1|5|U|2519
*
6MTD|1|5|A|2536
6MTD|1|5|A|2537
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- uL23
- Chain g
- eL34
- Chain k
- eL38
- Chain l
- eL39
Coloring options: