J3_6MTD_010

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6MTD|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|A|2551
6MTD|1|5|G|2552
6MTD|1|5|A|2553
6MTD|1|5|U|2554
6MTD|1|5|G|2555
*
6MTD|1|5|C|2572
6MTD|1|5|A|2573
6MTD|1|5|G|2574
6MTD|1|5|U|2575
*
6MTD|1|5|A|2757
6MTD|1|5|G|2758
6MTD|1|5|G|2759
6MTD|1|5|G|2760
6MTD|1|5|U|2761
6MTD|1|5|G|2762
6MTD|1|5|U|2763
6MTD|1|5|A|2764
6MTD|1|5|A|2765
6MTD|1|5|A|2766
6MTD|1|5|U|2767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

eL27