J3_6MTD_020

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_020 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.0805

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6MTD|1|9|A|40
6MTD|1|9|G|41
*
6MTD|1|9|C|481
6MTD|1|9|G|482
6MTD|1|9|C|483
6MTD|1|9|A|484
6MTD|1|9|A|485
6MTD|1|9|A|486
6MTD|1|9|U|487
*
6MTD|1|9|A|512
6MTD|1|9|G|513
6MTD|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12