J3_6MTD_032

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

6MTD|1|9|U|1535, 6MTD|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_032 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.1669

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6MTD|1|9|C|1532
6MTD|1|9|A|1533
6MTD|1|9|C|1534
6MTD|1|9|U|1535
6MTD|1|9|G|1536
*
6MTD|1|9|C|1597
6MTD|1|9|G|1598
6MTD|1|9|U|1599
6MTD|1|9|G|1600
6MTD|1|9|A|1601
6MTD|1|9|U|1602
6MTD|1|9|G|1603
6MTD|1|9|G|1604
*
6MTD|1|9|C|1635
6MTD|1|9|G|1636
6MTD|1|9|A|1637
6MTD|1|9|G|1638

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25