J3_6MTD_040

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_040 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1716

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6MTD|1|5|A|2598
6MTD|1|5|G|2599
6MTD|1|5|A|2600
6MTD|1|5|A|2601
6MTD|1|5|G|2602
*
6MTD|1|5|C|2737
6MTD|1|5|C|2738
*
6MTD|1|5|G|2742
6MTD|1|5|A|2743
6MTD|1|5|A|2744
6MTD|1|5|A|2745
6MTD|1|5|A|2746
6MTD|1|5|U|2747

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

eL43