J3_6MTD_043
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 6MTD|1|9|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MTD_043 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0639
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6MTD|1|9|A|40
6MTD|1|9|G|41
6MTD|1|9|A|42
6MTD|1|9|U|43
6MTD|1|9|U|44
6MTD|1|9|A|45
6MTD|1|9|A|46
6MTD|1|9|G|47
*
6MTD|1|9|C|479
6MTD|1|9|G|480
6MTD|1|9|C|481
6MTD|1|9|G|482
6MTD|1|9|C|483
6MTD|1|9|A|484
6MTD|1|9|A|485
6MTD|1|9|A|486
6MTD|1|9|U|487
*
6MTD|1|9|A|512
6MTD|1|9|G|513
6MTD|1|9|U|514
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain JJ
- uS4
- Chain XX
- uS12
- Chain v
- eEF2
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