J3_6MTD_045

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_045 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1297

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6MTD|1|9|U|1350
6MTD|1|9|G|1351
*
6MTD|1|9|U|1360
6MTD|1|9|G|1361
6MTD|1|9|U|1362
6MTD|1|9|C|1363
*
6MTD|1|9|G|1375
6MTD|1|9|A|1376
6MTD|1|9|U|1377
6MTD|1|9|A|1378
6MTD|1|9|A|1379

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain CC

uS5

Chain RR

eS17