3D structure

PDB id
6MTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UU*AGAAG*CGUGGA
Length
13 nucleotides
Bulged bases
6MTE|1|5|A|1805, 6MTE|1|5|U|1834
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6MTE_007 not in the Motif Atlas
Homologous match to J3_8P9A_051
Geometric discrepancy: 0.4487
The information below is about J3_8P9A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_09667.1
Basepair signature
cWW-cWW-F-F-cSS-F-F-cWW
Number of instances in this motif group
2

Unit IDs

6MTE|1|5|U|1726
6MTE|1|5|U|1727
*
6MTE|1|5|A|1802
6MTE|1|5|G|1803
6MTE|1|5|A|1804
6MTE|1|5|A|1805
6MTE|1|5|G|1806
*
6MTE|1|5|C|1832
6MTE|1|5|G|1833
6MTE|1|5|U|1834
6MTE|1|5|G|1835
6MTE|1|5|G|1836
6MTE|1|5|A|1837

Current chains

Chain 5
28S rRNA

Nearby chains

Chain F
uL30
Chain T
eL21
Chain b
eL29

Coloring options:


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