J3_6MTE_027

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

6MTE|1|9|A|1679

QA status

Modified nucleotides: B8Q, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTE_027 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.1471

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6MTE|1|9|C|1218
6MTE|1|9|B8Q|1219
6MTE|1|9|A|1220
6MTE|1|9|G|1221
*
6MTE|1|9|C|1645
6MTE|1|9|C|1646
6MTE|1|9|A|1647
6MTE|1|9|G|1648
6MTE|1|9|U|1649
6MTE|1|9|A|1650
6MTE|1|9|A|1651
*
6MTE|1|9|U|1673
6MTE|1|9|G|1674
6MTE|1|9|A|1675
6MTE|1|9|U|1676
6MTE|1|9|U|1677
6MTE|1|9|A2M|1678
6MTE|1|9|A|1679
6MTE|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain cc

eS28