J3_6MTE_038

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTE_038 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.1344

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

6MTE|1|5|G|1969
6MTE|1|5|A|1970
6MTE|1|5|U|1971
*
6MTE|1|5|G|1995
6MTE|1|5|C|1996
6MTE|1|5|U|1997
6MTE|1|5|A|1998
6MTE|1|5|A|1999
6MTE|1|5|G|2000
6MTE|1|5|G|2001
*
6MTE|1|5|C|2016
6MTE|1|5|A|2017
6MTE|1|5|C|2018

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

uL10

Chain t

uL11