J3_6MTE_041

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTE_041 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1632

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6MTE|1|5|A|2598
6MTE|1|5|G|2599
6MTE|1|5|A|2600
6MTE|1|5|A|2601
6MTE|1|5|G|2602
*
6MTE|1|5|C|2737
6MTE|1|5|C|2738
*
6MTE|1|5|G|2742
6MTE|1|5|A|2743
6MTE|1|5|A|2744
6MTE|1|5|A|2745
6MTE|1|5|A|2746
6MTE|1|5|U|2747

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

eL43