J3_6MTE_048
3D structure
- PDB id
- 6MTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAA(B8W)*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6MTE|1|5|C|4116, 6MTE|1|5|U|4117, 6MTE|1|5|U|4118, 6MTE|1|5|G|4121
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MTE_048 not in the Motif Atlas
- Homologous match to J3_8CRE_020
- Geometric discrepancy: 0.2582
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6MTE|1|5|G|4091
6MTE|1|5|G|4092
6MTE|1|5|G|4093
6MTE|1|5|G|4094
*
6MTE|1|5|C|4114
6MTE|1|5|G|4115
6MTE|1|5|C|4116
6MTE|1|5|U|4117
6MTE|1|5|U|4118
6MTE|1|5|C|4119
6MTE|1|5|U|4120
6MTE|1|5|G|4121
6MTE|1|5|G|4122
6MTE|1|5|C|4123
6MTE|1|5|G|4124
6MTE|1|5|C|4125
6MTE|1|5|C|4126
6MTE|1|5|A|4127
6MTE|1|5|A|4128
6MTE|1|5|B8W|4129
*
6MTE|1|5|C|4155
6MTE|1|5|G|4156
6MTE|1|5|A|4157
6MTE|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain BB
- eS1
- Chain G
- eL8
- Chain X
- uL23
- Chain Z
- eL27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
Coloring options: