J3_6MWN_002

3D structure

PDB id

6MWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

CUUAAAUG*CUC*GG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_93059.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6MWN|1|B|C|610
6MWN|1|B|U|611
6MWN|1|B|U|612
6MWN|1|B|A|613
6MWN|1|B|A|614
6MWN|1|B|A|615
6MWN|1|B|U|616
6MWN|1|B|G|617
*
6MWN|1|B|C|639
6MWN|1|B|U|640
6MWN|1|B|C|641
*
6MWN|1|B|G|666
6MWN|1|B|G|667

Current chains

Chain B

HAV dV RNA (92-MER)

Nearby chains

Chain H

Fab HAVx Heavy Chain