J3_6N1D_002
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N1D_002 not in the Motif Atlas
- Homologous match to J3_5J7L_002
- Geometric discrepancy: 0.1353
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6N1D|1|A16S|C|586
6N1D|1|A16S|G|587
6N1D|1|A16S|G|588
*
6N1D|1|A16S|C|651
6N1D|1|A16S|U|652
6N1D|1|A16S|A|653
6N1D|1|A16S|G|654
*
6N1D|1|A16S|C|754
6N1D|1|A16S|G|755
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain AS08
- 30S ribosomal protein S8
- Chain AS12
- 30S ribosomal protein S12
- Chain AS15
- 30S ribosomal protein S15
- Chain AS17
- 30S ribosomal protein S17
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