J3_6N1D_006

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6N1D|1|A16S|A|975, 6N1D|1|A16S|G|976, 6N1D|1|A16S|G|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_006 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.2386

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|A16S|U|955
6N1D|1|A16S|U|956
6N1D|1|A16S|U|957
6N1D|1|A16S|A|958
6N1D|1|A16S|A|959
6N1D|1|A16S|U|960
6N1D|1|A16S|U|961
6N1D|1|A16S|C|962
*
6N1D|1|A16S|G|973
6N1D|1|A16S|A|974
6N1D|1|A16S|A|975
6N1D|1|A16S|G|976
6N1D|1|A16S|A|977
6N1D|1|A16S|A|978
6N1D|1|A16S|C|979
6N1D|1|A16S|C|980
6N1D|1|A16S|U|981
6N1D|1|A16S|U|982
6N1D|1|A16S|A|983
6N1D|1|A16S|C|984
*
6N1D|1|A16S|G|1221
6N1D|1|A16S|G|1222
6N1D|1|A16S|C|1223
6N1D|1|A16S|G|1224
6N1D|1|A16S|A|1225

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS10

30S ribosomal protein S10

Chain AS13

30S ribosomal protein S13

Chain AS14

30S ribosomal protein S14 type Z

Chain AS19

30S ribosomal protein S19

Chain ATHX

30S ribosomal protein Thx