J3_6N1D_014

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

6N1D|1|A23S|A|73, 6N1D|1|A23S|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_014 not in the Motif Atlas

Homologous match to J3_7A0S_002

Geometric discrepancy: 0.1479

The information below is about J3_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|A23S|A|56
6N1D|1|A23S|C|57
*
6N1D|1|A23S|G|70
6N1D|1|A23S|A|71
6N1D|1|A23S|U|72
6N1D|1|A23S|A|73
6N1D|1|A23S|A|74
6N1D|1|A23S|G|75
6N1D|1|A23S|C|76
*
6N1D|1|A23S|G|110
6N1D|1|A23S|A|111
6N1D|1|A23S|U|112
6N1D|1|A23S|G|113
6N1D|1|A23S|U|114

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL23

50S ribosomal protein L23

Chain AL29

50S ribosomal protein L29

Chain AL34

50S ribosomal protein L34