J3_6N1D_020

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6N1D|1|A23S|C|1607, 6N1D|1|A23S|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_020 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.2775

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6N1D|1|A23S|C|1306
6N1D|1|A23S|A|1307
6N1D|1|A23S|A|1308
6N1D|1|A23S|G|1309
*
6N1D|1|A23S|C|1605
6N1D|1|A23S|G|1606
6N1D|1|A23S|C|1607
6N1D|1|A23S|A|1608
6N1D|1|A23S|A|1609
6N1D|1|A23S|A|1610
6N1D|1|A23S|C|1611
*
6N1D|1|A23S|G|1620
6N1D|1|A23S|U|1621
6N1D|1|A23S|G|1622

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL34

50S ribosomal protein L34