J3_6N1D_026
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 6N1D|1|A5S|U|14, 6N1D|1|A5S|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N1D_026 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.1969
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N1D|1|A5S|C|11
6N1D|1|A5S|C|12
6N1D|1|A5S|A|13
6N1D|1|A5S|U|14
6N1D|1|A5S|A|15
6N1D|1|A5S|G|16
*
6N1D|1|A5S|C|68
6N1D|1|A5S|G|69
*
6N1D|1|A5S|U|107
6N1D|1|A5S|C|108
6N1D|1|A5S|G|109
Current chains
- Chain A5S
- 5s rRNA
Nearby chains
- Chain A23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL25
- 50S ribosomal protein L25
- Chain AL27
- 50S ribosomal protein L27
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