J3_6N1D_027

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_027 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1772

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|B16S|G|46
6N1D|1|B16S|C|47
*
6N1D|1|B16S|G|361
6N1D|1|B16S|G|362
6N1D|1|B16S|A|363
6N1D|1|B16S|A|364
6N1D|1|B16S|U|365
6N1D|1|B16S|C|366
6N1D|1|B16S|U|367
*
6N1D|1|B16S|A|393
6N1D|1|B16S|G|394
6N1D|1|B16S|C|395

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS12

30S ribosomal protein S12

Chain BS16

30S ribosomal protein S16