J3_6N1D_033
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6N1D|1|B16S|A|975, 6N1D|1|B16S|G|976, 6N1D|1|B16S|G|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N1D_033 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1439
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6N1D|1|B16S|U|955
6N1D|1|B16S|U|956
6N1D|1|B16S|U|957
6N1D|1|B16S|A|958
6N1D|1|B16S|A|959
6N1D|1|B16S|U|960
6N1D|1|B16S|U|961
6N1D|1|B16S|C|962
*
6N1D|1|B16S|G|973
6N1D|1|B16S|A|974
6N1D|1|B16S|A|975
6N1D|1|B16S|G|976
6N1D|1|B16S|A|977
6N1D|1|B16S|A|978
6N1D|1|B16S|C|979
6N1D|1|B16S|C|980
6N1D|1|B16S|U|981
6N1D|1|B16S|U|982
6N1D|1|B16S|A|983
6N1D|1|B16S|C|984
*
6N1D|1|B16S|G|1221
6N1D|1|B16S|G|1222
6N1D|1|B16S|C|1223
6N1D|1|B16S|G|1224
6N1D|1|B16S|A|1225
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BATN
- Transfer RNA; tRNA
- Chain BS10
- 30S ribosomal protein S10
- Chain BS13
- 30S ribosomal protein S13
- Chain BS14
- 30S ribosomal protein S14 type Z
- Chain BS19
- 30S ribosomal protein S19
- Chain BTHX
- 30S ribosomal protein Thx
Coloring options: