J3_6N1D_043

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6N1D|1|B23S|G|686, 6N1D|1|B23S|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_043 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1348

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|C|683
6N1D|1|B23S|G|684
6N1D|1|B23S|A|685
6N1D|1|B23S|G|686
6N1D|1|B23S|C|687
6N1D|1|B23S|U|688
6N1D|1|B23S|A|689
*
6N1D|1|B23S|U|773
6N1D|1|B23S|A|774
6N1D|1|B23S|G|775
*
6N1D|1|B23S|C|791
6N1D|1|B23S|G|792
6N1D|1|B23S|A|793
6N1D|1|B23S|G|794

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL04

50S ribosomal protein L4

Chain BL34

50S ribosomal protein L34