J3_6N1D_044

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_044 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1066

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6N1D|1|B23S|C|698
6N1D|1|B23S|A|699
6N1D|1|B23S|G|700
*
6N1D|1|B23S|C|732
6N1D|1|B23S|G|733
6N1D|1|B23S|A|734
6N1D|1|B23S|A|735
6N1D|1|B23S|C|736
*
6N1D|1|B23S|G|760
6N1D|1|B23S|A|761
6N1D|1|B23S|U|762
6N1D|1|B23S|G|763

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL34

50S ribosomal protein L34