J3_6N1D_054

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

6N1D|1|B5S|U|14, 6N1D|1|B5S|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_054 not in the Motif Atlas

Homologous match to J3_7RQB_015

Geometric discrepancy: 0.2354

The information below is about J3_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08462.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6N1D|1|B5S|C|11
6N1D|1|B5S|C|12
6N1D|1|B5S|A|13
6N1D|1|B5S|U|14
6N1D|1|B5S|A|15
6N1D|1|B5S|G|16
*
6N1D|1|B5S|C|68
6N1D|1|B5S|G|69
*
6N1D|1|B5S|U|107
6N1D|1|B5S|C|108
6N1D|1|B5S|G|109

Current chains

Chain B5S

5s rRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BL18

50S ribosomal protein L18

Chain BL25

50S ribosomal protein L25

Chain BL27

50S ribosomal protein L27