J3_6N1D_057

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_057 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1638

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|A16S|C|936
6N1D|1|A16S|A|937
6N1D|1|A16S|A|938
6N1D|1|A16S|G|939
*
6N1D|1|A16S|C|1344
6N1D|1|A16S|U|1345
6N1D|1|A16S|A|1346
6N1D|1|A16S|G|1347
6N1D|1|A16S|U|1348
6N1D|1|A16S|A|1349
6N1D|1|A16S|A|1350
*
6N1D|1|A16S|U|1372
6N1D|1|A16S|G|1373
6N1D|1|A16S|A|1374
6N1D|1|A16S|A|1375
6N1D|1|A16S|U|1376
6N1D|1|A16S|A|1377
6N1D|1|A16S|C|1378
6N1D|1|A16S|G|1379

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS07

30S ribosomal protein S7

Chain AS09

30S ribosomal protein S9