J3_6N1D_064
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6N1D|1|A23S|A|2388, 6N1D|1|A23S|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N1D_064 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1439
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6N1D|1|A23S|G|2282
6N1D|1|A23S|C|2283
6N1D|1|A23S|C|2284
*
6N1D|1|A23S|G|2384
6N1D|1|A23S|C|2385
6N1D|1|A23S|C|2386
6N1D|1|A23S|U|2387
6N1D|1|A23S|A|2388
6N1D|1|A23S|G|2389
6N1D|1|A23S|U|2390
6N1D|1|A23S|G|2391
6N1D|1|A23S|A|2392
6N1D|1|A23S|A|2393
6N1D|1|A23S|C|2394
6N1D|1|A23S|C|2395
*
6N1D|1|A23S|G|2421
6N1D|1|A23S|A|2422
6N1D|1|A23S|U|2423
6N1D|1|A23S|C|2424
6N1D|1|A23S|A|2425
6N1D|1|A23S|A|2426
6N1D|1|A23S|C|2427
Current chains
- Chain A23S
- 23S rRNA
Nearby chains
- Chain AL15
- 50S ribosomal protein L15
- Chain AL27
- 50S ribosomal protein L27
- Chain AL28
- 50S ribosomal protein L28
- Chain AL33
- 50S ribosomal protein L33
- Chain AL35
- 50S ribosomal protein L35
- Chain APTN
- Transfer RNA; tRNA
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