J3_6N5O_002

3D structure

PDB id

6N5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

UUAAUC*GUAG*CGCA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N5O_002 not in the Motif Atlas

Homologous match to J3_6N5P_002

Geometric discrepancy: 0.0376

The information below is about J3_6N5P_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_15893.3

Basepair signature

cWW-tSH-cSS-tHS-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6N5O|1|A|U|47
6N5O|1|A|U|48
6N5O|1|A|A|49
6N5O|1|A|A|50
6N5O|1|A|U|51
6N5O|1|A|C|52
*
6N5O|1|A|G|68
6N5O|1|A|U|69
6N5O|1|A|A|70
6N5O|1|A|G|71
*
6N5O|1|A|C|87
6N5O|1|A|G|88
6N5O|1|A|C|89
6N5O|1|A|A|90

Current chains

Chain A

RNA (126-MER)

Nearby chains