Motif J3_15893.3 Version J3_15893.3 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-10 | 3-11 | 5-8 | 6-7 | 9-12 | 10-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4W90_001 | 4W90 | 0.0841 | 0 | C-di-AMP riboswitch | C | cyclic di-AMP riboswitch | U | 62 | G | 63 | A | 64 | A | 65 | U | 66 | C | 67 | * | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 90 | G | 91 | A | 92 | A | 93 | cWW | tSH | cSs | cWw | cWW | tHS | cWW | |
| 2 | J3_4QK9_001 | 4QK9 | 0.0000 | 0 | C-di-AMP riboswitch | A | cyclic di-AMP riboswitch | U | 47 | G | 48 | A | 49 | A | 50 | U | 51 | C | 52 | * | G | 65 | U | 66 | A | 67 | G | 68 | * | C | 87 | G | 88 | A | 89 | A | 90 | cWW | tSH | cSs | ntSs | cWw | cWW | tHS | cWW |
| 3 | J3_4QLM_001 | 4QLM | 0.0859 | 0 | C-di-AMP riboswitch | A | cyclic di-AMP riboswitch | C | 43 | G | 44 | A | 45 | A | 46 | U | 47 | C | 48 | * | G | 65 | U | 66 | A | 67 | G | 68 | * | C | 85 | G | 86 | A | 87 | G | 88 | cWW | tSH | cSs | cWw | cWW | tHS | cWW | |
| 4 | J3_6N5P_002 | 6N5P | 0.1247 | 0 | A | cyclic di-AMP riboswitch | U | 48 | U | 49 | A | 50 | A | 51 | U | 52 | C | 53 | * | G | 69 | U | 70 | A | 71 | G | 72 | * | C | 88 | G | 89 | C | 90 | A | 91 | cWW | ntSH | cSs | ntSs | cWw | cWW | tHS | cWW | |
| 5 | J3_6N5P_001 | 6N5P | 0.1658 | 0 | A | cyclic di-AMP riboswitch | C | 7 | G | 8 | A | 9 | A | 10 | U | 11 | C | 12 | * | G | 24 | U | 25 | A | 26 | C | 27 | * | G | 108 | G | 109 | A | 110 | G | 111 | cWW | tSH | cSs | tSs | cWw | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAUC*GUAG*CGAA | 2 |
| CGAAUC*GUAG*CGAG | 1 |
| UUAAUC*GUAG*CGCA | 1 |
| CGAAUC*GUAC*GGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAU*UA*GA | 4 |
| UAAU*UA*GC | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-di-AMP riboswitch (3)
- (2)
- Basepair signature
- cWW-tSH-cSS-tHS-F-cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.10 | Max 0.17
Coloring options: