3D structure

PDB id
6N8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UU*AGAAG*CAUUUGA
Length
14 nucleotides
Bulged bases
6N8J|1|1|A|1065, 6N8J|1|1|U|1095
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6N8J_006 not in the Motif Atlas
Homologous match to J3_5TBW_006
Geometric discrepancy: 0.1868
The information below is about J3_5TBW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11066.3
Basepair signature
cWW-cSS-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6N8J|1|1|U|986
6N8J|1|1|U|987
*
6N8J|1|1|A|1062
6N8J|1|1|G|1063
6N8J|1|1|A|1064
6N8J|1|1|A|1065
6N8J|1|1|G|1066
*
6N8J|1|1|C|1092
6N8J|1|1|A|1093
6N8J|1|1|U|1094
6N8J|1|1|U|1095
6N8J|1|1|U|1096
6N8J|1|1|G|1097
6N8J|1|1|A|1098

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain F
60S ribosomal protein L7-A
Chain T
60S ribosomal protein L21-A
Chain o
60S ribosomal protein L29

Coloring options:


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