J3_6N8K_018

3D structure

PDB id

6N8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

6N8K|1|1|A|398, 6N8K|1|1|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N8K_018 not in the Motif Atlas

Homologous match to J3_8P9A_047

Geometric discrepancy: 0.1029

The information below is about J3_8P9A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6N8K|1|1|A|369
6N8K|1|1|U|370
6N8K|1|1|G|371
6N8K|1|1|A|372
6N8K|1|1|A|373
6N8K|1|1|A|374
6N8K|1|1|A|375
6N8K|1|1|G|376
6N8K|1|1|A|377
6N8K|1|1|A|378
6N8K|1|1|C|379
*
6N8K|1|1|G|390
6N8K|1|1|A|391
6N8K|1|1|G|392
6N8K|1|1|U|393
6N8K|1|1|G|394
6N8K|1|1|A|395
6N8K|1|1|A|396
6N8K|1|1|A|397
6N8K|1|1|A|398
6N8K|1|1|A|399
6N8K|1|1|G|400
6N8K|1|1|U|401
6N8K|1|1|A|402
6N8K|1|1|C|403
6N8K|1|1|G|404
*
6N8K|1|3|C|19
6N8K|1|3|U|20

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Chain 3

5.8S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain P

60S ribosomal protein L17-A

Chain Y

60S ribosomal protein L26-A

Chain b

Nucleolar GTP-binding protein 1

Chain l

60S ribosomal protein L39